Disease

Whirling Disease in Colorado

Myxobolus cerebralis (a parasite)

Whirling disease is a parasitic infection that deforms young trout and makes them swim in circles. It reached Colorado's rivers in the 1980s, cut wild rainbow trout populations by more than 90% in places, and remains a threat to native cutthroat trout.

At a glance

First found in the U.S.
1958
Found in Colorado River fish
1988
Lower Gunnison rainbow decline
More than 90%
Resistant rainbows first stocked
2004

By the numbers

The parasite needs two hosts

Myxobolus cerebralis cycles between trout and a small aquatic worm, Tubifex tubifex. It cannot pass directly from fish to fish.

Cycle diagram: Young trout to Tubifex worm and back to Young trout.

Young trout

Parasite attacks head and spine cartilage; fish whirl and can be deformed

1. Infected fish release spores

3. The worm releases a stage that infects fish

Tubifex worm

2. Worms eat the spores, and the parasite multiplies inside them

Sources: Washington Animal Disease Diagnostic Lab; USGS

Arrival and response

  1. 1958

    First detected in the United States.

  2. 1988

    Fish downstream of private ponds above Windy Gap Reservoir, on the upper Colorado River, test positive.

  3. 1995

    Parasite found at Leadville National Fish Hatchery.

  4. 2004

    CPW begins stocking resistant rainbow trout in the lower Gunnison.

  5. 2006

    Resistant rainbows stocked in the upper Colorado River.

  6. 2007

    Leadville hatchery certified free of whirling disease.

Sources: USGS; Avila et al. 2025; USFWS

Lower Gunnison rainbow trout

Wild rainbows declined by more than 90% after the parasite arrived.

Under 10% remained

Native cutthroat

25%+

mortality in greenbacks under 1 year old when lightly exposed. As of 2009, no known wild greenback populations had been infected.

Sources: Avila et al. 2025; USFWS 5-year review, 2009

What it is

Whirling disease is caused by the parasite Myxobolus cerebralis. It is thought to have been introduced from Europe, and it was first detected in the United States in 1958.

The parasite needs two hosts: a trout or other salmonid, and the small aquatic worm Tubifex tubifex. Worms eat spores released from infected fish. The parasite multiplies in the worm, which then releases the stage that infects fish.

How it spreads

Whirling disease cannot pass directly from fish to fish. It moves through the worm stage of its life cycle, and its spores can stay viable for up to 30 years.

In Colorado, hatcheries spread it. Infected fish reached state and private hatcheries in the late 1980s, spreading the parasite to about 40 stocking locations.

In Colorado

  • 1980s: Researchers trace its arrival in the upper Colorado River to privately reared rainbow trout stocked into three private ponds above Windy Gap Reservoir in the 1980s.
  • 1988: Fish downstream tested positive.
  • Late 1980s: Infected fish reached state and private hatcheries, spreading the parasite to about 40 stocking locations.
  • 1995: Leadville National Fish Hatchery found the parasite.
  • Late 1990s: Whirling disease invaded the Trappers Lake population of Colorado River cutthroat trout.
  • 2004: CPW began stocking whirling-disease-resistant rainbow trout in the lower Gunnison River, and in the upper Colorado River in 2006.
  • 2007: Leadville National Fish Hatchery was certified free of whirling disease.

Effects on wildlife

The parasite penetrates the head and spinal cartilage of young trout, putting pressure on the organ of balance, so fish swim erratically, or whirl, and struggle to feed and escape predators. Survivors can be deformed, and infected fish may show dark tails. Younger fish are more susceptible than older fish. Rainbow trout are the most susceptible, followed by cutthroat, brook and brown trout.

Lower Gunnison River rainbow trout declined by more than 90% after the parasite arrived, and upper Colorado River rainbows collapsed similarly. CPW says whirling disease is “believed to be a major factor in the declines of wild rainbow trout populations across Colorado waters.”

Native cutthroat

For the greenback cutthroat trout, USFWS’s 2009 five-year review says: “Young greenbacks are highly susceptible to whirling disease. Greenbacks less than 1 year of age had a mortality of greater than 25% when lightly exposed to the disease.” As of 2009, it says, “no known wild greenback populations have been infected.”

On December 9, 2024, USFWS found federal listing of the Rio Grande cutthroat trout not warranted. It named nonnative trout as the primary threat and “habitat loss, reduced habitat connectivity and whirling disease” as additional threats.

CPW says whirling disease invaded the Trappers Lake population of Colorado River cutthroat trout in the late 1990s and “has now firmly established itself suppressing recruitment of cutthroat trout.”

What’s being done

Resistant rainbows

CPW bred whirling-disease-resistant rainbow trout from the German “Hofer” strain crossed with wild Colorado strains. It began stocking them in the lower Gunnison in 2004 and the upper Colorado in 2006, and resistant strains have since been stocked into all major Colorado coldwater drainages. Wild rainbow populations there have kept the genes for resistance.

Clean hatcheries

Leadville National Fish Hatchery found the parasite in 1995, installed filters and ultraviolet treatment, and was certified free of whirling disease in 2007.

Stocking rules

Colorado Wildlife Commission policy D-9 prohibits stocking salmonids that test positive for the parasite.

Does it affect people?

No. In the words of a state guide: “Whirling disease does not affect humans, so you don’t have to be concerned about eating trout.”

How you can help

  • Clean, drain and dry your gear. Remove plants, animals and mud, and wash boats, trailers, waders and gear before leaving a lake or stream.
  • Never move fish from one body of water to another.
  • Use live bait fish only in the water they came from. Colorado fishing regulations require it.

Species on this site

Frequently asked questions

Is whirling disease still in Colorado?
Yes. Researchers trace its arrival in the upper Colorado River to privately reared rainbow trout stocked into three private ponds above Windy Gap Reservoir in the 1980s; fish downstream tested positive in 1988. Infected fish also reached state and private hatcheries in the late 1980s, spreading the parasite to about 40 stocking locations. CPW has since stocked whirling-disease-resistant rainbow trout into all major Colorado coldwater drainages, and wild rainbow populations there have kept the genes for resistance. Spores can stay viable for up to 30 years.
Is it safe to eat trout with whirling disease?
Yes. Whirling disease does not affect humans, so you don't have to be concerned about eating trout.
Does whirling disease affect native cutthroat trout?
Yes. USFWS's 2009 five-year review says young greenback cutthroat trout are highly susceptible, with mortality of greater than 25% in fish under 1 year old when lightly exposed, though as of 2009 no known wild greenback populations had been infected. In December 2024, USFWS named whirling disease among the additional threats to the Rio Grande cutthroat trout. CPW says the disease invaded the Trappers Lake population of Colorado River cutthroat trout in the late 1990s and now suppresses recruitment there.

Sources

Key research

Photo credits

  • Greenback Cutthroat Trout: Chris Kennedy/USFWS, Public Domain
  • Rio Grande Cutthroat Trout: Abigail Lynch/USGS, Public Domain

Last reviewed September 2026

Report an error